PhaseLAB documentation

PhaseLAB is a Matlab toolbox aimed at dealing with quantitative phase images. It has been developed by Guillaume Baffou, CNRS research scientist at the Fresnel Institute (Marseille, France).

PhaseLAB is licensed under the Creative Commons Attribution-NonCommercial (CC BY-NC) license. This means you are free to use, share, and modify the software, but only for non-commercial purposes.

By using this software, you agree to abide by the terms of the CC BY-NC license. If you have any questions about the license or its terms, please refer to the accompanying license file or contact us for clarification.

The toolbox is accessible at github.com/baffou/PhaseLAB.

Table of Content:

• Download
• Introduction
  • What are QLSI and CGM?
  • How to setup CGM experimentally?
  • The 3 main functionalities of PhaseLAB
  • This Matlab toolbox uses OOP
  • Basic examples of PhaseLAB codes

Tutorial

• Build the optical setup
  • Defining the Illumination
  • Defining the Microscope
  • Defining the QLSI Camera
  • Summary
• Import experimental interferograms
  • Manual import
  • Automatic import
• Process experimental images
• Display experimental images
  • The functions: imagesc , imageph , imagebw , imagegb , imagejet
  • The dynamicFigure function
  • The figure method
  • The opendx method
  • Color scales
  • Color scale generator
• In silico QLSI
  • Model a nanoparticle
  • Model an interferogram
  • Process the interferogram
  • Model arbitrary objects
• Multichannel imaging
  • Multicolor imaging
  • Multipolar imaging

Code examples

• Code examples
  • Import experimental images
  • Auto import experimental images
  • Image simulation
  • Image postprocessing
  • Make a movie
  • In Silico simulation
  • Numerical refocusing
  • Color imaging

GUI

• The GUI of PhaseLAB
  • The navigation panel
  • The top panel
  • The properties tab
  • The processing tab
  • The metrology tab
  • The export tab

Classes

• Camera
  • Properties
  • Constructor
  • Camera methods
• CGcamera
  • Properties
  • Constructor
  • CGcamera methods
• CrossGrating
  • Properties
  • Constructor
• Dipole
  • Properties
  • Constructor
  • Dipole methods
• Illumination
  • Properties
  • Constructor
  • Illumination methods
• ImageEM
  • Properties
  • ImageEM methods
• ImageQLSI
  • Properties
  • Constructor
  • ImageQLSI methods
• Interfero
  • Properties
  • Constructor
  • Interfero methods
• Microscope
  • Properties
  • Constructor
  • Microscope methods
• Objective
  • Properties
  • Constructor

Functions

• CGMinSilico
  • In Silico simulation
• imaging
  • Image simulation
• importItfRef
• dynamicFigure
• dynamicMovie